1. Introduction

Forest trees are long-lived and immobile individuals that serve as ideal models to assess population structure and adaptation to the environment. Despite the availability of comprehensive data, the researchers who study them are challenged to integrate data describing genotype, phenotype, and the environment. Towards this goal, the web application Cartograplant was designed and implemented as an open repository and open-source analytic web-based framework for all three. This framework allows query and analysis in a map-based interface to primarily enable association mapping, ecological genomics, and landscape genomics, through high performance computing. The high performance computing and hosted applications are connected to the user queried data via web services. Ontologies implemented for sequence, phenotype, and environmental metrics facilitate these transactions.

1.1. Project members

Member

Institution

Position

Jill Wegrzyn

University of Connecticut

Principal Investigator

Brandon Lind

University of Connecticut

Postdoctoral Scholar

Risharde Ramnath

University of Connecticut

Lead Developer

Emily Grau

University of Connecticut

Lead Database Administrator

Gabe Barrett

University of Connecticut

Developer

Vlad Savitsky

University of Connecticut

Developer

Meghan Myles

University of Connecticut

PhD Student

Phoebe Zhou

University of Connecticut

Curator

Trang Nguyen

University of Connecticut

Curator