1. Introduction
Forest trees are long-lived and immobile individuals that serve as ideal models to assess population structure and adaptation to the environment. Despite the availability of comprehensive data, the researchers who study them are challenged to integrate data describing genotype, phenotype, and the environment. Towards this goal, the web application Cartograplant was designed and implemented as an open repository and open-source analytic web-based framework for all three. This framework allows query and analysis in a map-based interface to primarily enable association mapping, ecological genomics, and landscape genomics, through high performance computing. The high performance computing and hosted applications are connected to the user queried data via web services. Ontologies implemented for sequence, phenotype, and environmental metrics facilitate these transactions.
1.1. Project members
Member |
Institution |
Position |
|---|---|---|
Jill Wegrzyn |
University of Connecticut |
Principal Investigator |
Brandon Lind |
University of Connecticut |
Postdoctoral Scholar |
Risharde Ramnath |
University of Connecticut |
Lead Developer |
Emily Grau |
University of Connecticut |
Lead Database Administrator |
Gabe Barrett |
University of Connecticut |
Developer |
Vlad Savitsky |
University of Connecticut |
Developer |
Meghan Myles |
University of Connecticut |
PhD Student |
Phoebe Zhou |
University of Connecticut |
Curator |
Trang Nguyen |
University of Connecticut |
Curator |